Studi In Silico Turunan Kumarin dari Daphne mezereum sebagai Inhibitor EGFR pada Kanker Paru-Paru In Silico Study of Coumarin Derivatives from Daphne mezereum as EGFR Inhibitors in Lung Cancer
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Abstract
Lung cancer is one of the leading causes of cancer-related death worldwide and is often associated with overexpression of the Epidermal Growth Factor Receptor (EGFR), making the development of EGFR inhibitors an important therapeutic strategy. This study aims to evaluate the potential of coumarin derivatives from Daphne mezereum as EGFR inhibitor candidates in lung cancer therapy using an in silico approach. This study used computational methods, including molecular docking to analyze binding affinity and ligand–protein interactions, drug-likeness evaluation based on Lipinski’s rule, and ADMET analysis to predict pharmacokinetic properties and toxicity. The results show that all compounds had RMSD values ≤ 2 Å, with a re-docking value of 1.1614 Å, indicating the validity of the method. Compound 2 showed the highest binding affinity and optimal interaction with the Met769 residue in EGFR, which plays a role in lung cancer cell proliferation, but it did not meet Lipinski’s criteria and had a less optimal ADMET profile. Conversely, compound 3 (umbelliferone) showed a balance between affinity, drug-likeness, and a good ADMET profile, including high absorption and non-toxic properties. The conclusion of this study emphasizes that compound 3 is more prospective as a lung cancer drug candidate, while compound 2 (7-hydroxycoumarin-5,8-di-β-D-glucopyranoside) has potential as a lead compound for further optimization. These findings contribute to the development of EGFR-targeted therapy based on coumarin derivatives and emphasize the importance of computational approaches in efficient and rational drug design.
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References
Ahmed, E. Y., Elghonemy, M. M., Batran, R. Z., Elasasy, M. E. A., El-Daly, S. M., Mahmoud, M. A., Awad, H. M., & Abdel Latif, N. A. (2025). Design, synthesis and molecular modeling of new coumarin–thiazole derivatives as dual EGFR/HDAC1 inhibitors: In vitro and in vivo anticancer assays. RSC Advances, 15(39), 32821–32832. https://doi.org/10.1039/D5RA04395F
Al-Fartusie, F. S., Khadim, R. M., & Hafid, A. (2025). A comprehensive review of lung cancer: Epidemiology, diagnosis, treatment, and risk factors in Iraq: A typical review of lung cancer. Iraqi Journal of Cancer and Medical Genetics, 18(1), 7–21. https://doi.org/10.29409/j7y8dw42
Bora, S., Patil, P., Chhajed, M., & Taleuzzaman, M. (2025). Design, synthesis, biological evaluation and in-silico study of thioether-linked 4-hydroxycoumarin-benzothiazole derivatives targeting EGFR for cancer therapy. Discover Chemistry, 2, Article 288. https://doi.org/10.1007/s44371-025-00369-8
Butt, H. S., Bada, L., Malterud, K. E., Inngjerdingen, K. T., & Wangensteen, H. (2025). New coumarins from a hot water extract of Daphne mezereum bark. Phytochemistry Letters, 67, Article 102954. https://doi.org/10.1016/j.phytol.2025.102954
Davda, B., Kumar Arun, J., Mishal, P. K., Kumar, A., Prasad, S., Kumar, D., Shah, H., Arora, I., & Firdaus, J. ul. (2025). Design, synthesis, and biological evaluation of coumarin derivatives: Investigating anti-inflammatory, antioxidant, and anticancer activities using in-vitro assays and cytotoxicity screening. Journal of Neonatal Surgery, 14(23S), 461–471. https://doi.org/10.63682/jns.v14i23S.5768
Elekofehinti, O. O., Ejelonu, O. C., Kamdem, J. P., Akinlosotu, O. B., Famuti, A., Adebowale, D. D., Iwaloye, O., Bulu, Y. I., Kade, I. J., & Rocha, J. B. T. (2018). Discovery of potential visfatin activators using in silico docking and ADME predictions as therapy for type 2 diabetes. Beni-Suef University Journal of Basic and Applied Sciences, 7(2), 241–249. https://doi.org/10.1016/j.bjbas.2018.02.007
Ferreira, L. G., dos Santos, R. N., Oliva, G., & Andricopulo, A. D. (2015). Molecular docking and structure-based drug design strategies. Molecules, 20(7), 13384–13421. https://doi.org/10.3390/molecules200713384
Hassaballah, A. I., El-Ziaty, A. K., Gado, M. M., Sayed, H. A. E., Kamal, M., & Ali, R. S. (2025). Design, synthesis, characterization, molecular docking, and antimicrobial evaluation of novel heterocycles with acrylonitrile and anthracene moieties. Scientific Reports, 15, Article 19370. https://doi.org/10.1038/s41598-025-03272-5
Ilić, K., Zvezdanović, J., Živanović, S., Krstić, N., Zlatković, B., & Lazarević, J. (2024). Lipid peroxidation inhibition study of flower extract and two coumarins isolated from Daphne mezereum L. Acta Medica Medianae, 63(1), 39–46. https://doi.org/10.5633/amm.2024.0104
Kementerian Kesehatan Republik Indonesia. (2023). Keputusan Menteri Kesehatan Republik Indonesia Nomor HK.01.07/MENKES/1438/2023 tentang Pedoman Nasional Pelayanan Kedokteran Tata Laksana Kanker Paru. https://kemkes.go.id/app_asset/file_content_download/16998444836551918303c728.14190138.pdf
Nursanti, O. (2023). Prediksi Toksisitas dan Farmakokinetika untuk Mendapatkan Kandidat Obat Antidiabetes. Journal Pharmaceutical Care and Sciences, 3(2), 1–9. https://doi.org/10.33859/jpcs.v3i2.293
Obakachi, V. A., Govender, K. K., & Govender, P. P. (2026). A dynamic scapping workflow for RTK domains: Computational modeling of natural products as dual modulators of EGFR and VEGFR signaling in breast cancer. Molecular Diversity, 30(1), 1459–1485. https://doi.org/10.1007/s11030-025-11263-x
Pliński, E. F., & Plińska, S. (2020). Veber’s rules in terahertz light [Preprint]. Research Square. https://doi.org/10.21203/rs.2.22281/v1
Pratama, A. B., Herowati, R., & Ansory, H. M. (2021). Studi Docking Molekuler Senyawa dalam Minyak Atsiri Pala (Myristica fragrans H.) dan Senyawa Turunan Miristisin terhadap Target Terapi Kanker Kulit. Majalah Farmaseutik, 17(2), 233–242. https://doi.org/10.22146/farmaseutik.v17i2.59297
Sari, I. W., Junaidin, & Pratiwi, D. (2020). Studi Molecular Docking Senyawa Flavonoid Herba Kumis Kucing (Orthosiphon stamineus B.) pada Reseptor α-Glukosidase sebagai Antidiabetes Tipe 2. Jurnal Farmagazine, 7(2), 54–60. https://doi.org/10.47653/farm.v7i2.194
Setyawati, N. K. A. A., Santika, I. W. M., & Yustiantara, P. S. (2022). Molecular Docking Senyawa α-Mangostin sebagai Antiinflamasi secara In Silico. Jurnal Jejaring Matematika dan Sains, 4(2), 41–49. https://doi.org/10.36873/jjms.2022.v4.i2.707
Shofi, M. (2022). Activity of phenolic compounds in figs (Ficus carica L.) as antihyperlipidemic through in silico study. Journal of Biology Education, 5(1), 79–97. https://doi.org/10.21043/jobe.v5i1.13995
Ulmaladipa, A., Safitri, E. N., Ilham, A., Aulia, V. S., Uyun, K., Sandra, A. K., Hubi, M. D. A., Putri, T. T., Cahyani, S. P., Farisy, K., Junaidi, R. S., & Wibisono, N. (2025). Prediksi Insilico dan Farmakokinetika dari Senyawa Aktif Cymbopogon nardus L. sebagai Agen Potensial Modulasi Metabolisme Lipid. Prosiding Seminar Nasional Ilmu Kesehatan, 11–20.
Verawati, R., Ikhsan, F., & Suryani, O. (2024). Interaction of coumarin, daphnetin, fraxetin from natural materials with carbonic anhydrase II in inhibiting glaucoma. Sains Natural: Journal of Biology and Chemistry, 14(4), 187–197. https://doi.org/10.31938/jsn.v14i4.735
Wu, M.-H., Xie, Z., & Zhi, D. (2025). A Folding-Docking-Affinity framework for protein-ligand binding affinity prediction. Communications Chemistry, 8, Article 108. https://doi.org/10.1038/s42004-025-01506-1
Zieniuk, B., Ononamadu, C. J., Jasińska, K., Wierzchowska, K., & Fabiszewska, A. (2022). Lipase-catalyzed synthesis, antioxidant activity, antimicrobial properties and molecular docking studies of butyl dihydrocaffeate. Molecules, 27(15), Article 5024. https://doi.org/10.3390/molecules27155024




















